PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618677.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 345aa    MW: 38497.1 Da    PI: 7.2658
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.49.1e-691152812154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........kskkqsa 85 
                     r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+  ++a++kr re          +s  + +
  XP_013618677.1 115 RQGGTNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSATSRetQNAKAKRLREAnggdnddkdRSGGSGS 209
                     68999******************************************************999998844333444444447777777666677788 PP

          DUF702  86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                     + +t+l++a+s++ +e s+ lP+evss+avfrcvrvss+++  +e+e+aYqtav+igGhvfkGiLydqGl++
  XP_013618677.1 210 ALATRLVNANSNSGFEESQnLPPEVSSPAVFRCVRVSSMENdeDEQEYAYQTAVNIGGHVFKGILYDQGLDQ 281
                     88999999999999987666*******************98434556**********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-63118280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.7E-27120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-26230279IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGFFYLGGR DNINNKQDHH HHVDKDHHQQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQQQQQQQNH VTASTNLYSF GMVPSSSNNN NNNRSRSLYF NVVSDHEPGG FSVTRQGGTN  120
CQDCGNQAKK DCPHLRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSATSR  180
ETQNAKAKRL REANGGDNDD KDRSGGSGSA LATRLVNANS NSGFEESQNL PPEVSSPAVF  240
RCVRVSSMEN DEDEQEYAYQ TAVNIGGHVF KGILYDQGLD QDHHHQLDLL ASTATTTNAE  300
EIAAKTAVTV AANTNNGLMI DPSSLYPSQL NSFIAGTPFF TPPRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618677.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0D3AQR30.0A0A0D3AQR3_BRAOL; Uncharacterized protein
STRINGBra008203.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-159SHI-related sequence 5